Extraction and reconstruction of constituent genomes from allopolyploid plants

ZHU Bin, Zeng Pan, LI Zai-yun*

CHINESE JOURNAL OF OIL CROP SCIENCES ›› 2018, Vol. 40 ›› Issue (2) : 290.

PDF(1641 KB)
Welcome to CHINESE JOURNAL OF OIL CROP SCIENCES, May. 14, 2025
PDF(1641 KB)
CHINESE JOURNAL OF OIL CROP SCIENCES ›› 2018, Vol. 40 ›› Issue (2) : 290. DOI: 10.7505/j.issn.1007-9084.2018.02.016

Extraction and reconstruction of constituent genomes from allopolyploid plants

Author information +
History +

Abstract

 Diploid parents of allopolyploid species are difficult to identify due to their long history of evolution, and the extant of their presumable parents in nature experienced independent evolution. To understand the genetic contributions and interplay for the allopolyploidy species, particular experimental programs are needed to extract their constituent genomes and reconstruct their progenitors. Different crossing strategies were successfully adopted on progenitor restitution from allohexaploid bread wheat and allopolyploid Brassica napus. For example, through the synthesis of Brassica allohexaploid (AA.BBCC from B. rapa × B. carinata), ancestral B. nigra (BB) was restituted followed by preferential elimination of C genome in B. juncea (AA.BB), and by hybridization of B. juncea (AA.BB) to B. carinata, and then by selfing the hybrid (BBAC) thereafter. Another example, ancestral diploid parent (CC) was restituted followed by the first synthesis of auto-allo-polyploids (e.g. AAAACC) between the allotetraploid and one of extant diploid parent, and then the loss of A chromosome from tetraploid-state genome during selfing generations.

Key words

 Brassica / allopolyploid / ancestral diploid parent / genome / cytogenetics / evolution

Cite this article

Download Citations
ZHU Bin, Zeng Pan, LI Zai-yun* . Extraction and reconstruction of constituent genomes from allopolyploid plants[J]. CHINESE JOURNAL OF OIL CROP SCIENCES, 2018, 40(2): 290 https://doi.org/10.7505/j.issn.1007-9084.2018.02.016

References

[1] Ramsey J, Schemske D W. Pathways, mechanisms, and rates of polyploid formation in flowering plants[J]. Annu Rev Ecol Evol Syst, 1998, 29: 467–501.



[2] Levin D A. The cytoplasmic factor in plant speciation[J]. Syst Bot, 2003, 28: 5-11.



[3] Otto S P. 2007. The evolutionary consequences of polyploidy[J]. Cell 131: 452–462.



[4] Doyle J J, Flagel L E, Paterson A H, et al. Evolutionary genetics of genome merger and doubling in plants[J]. Annu Rev Genet, 2008, 42: 443-461.



[5] Soltis P S, Soltis D E. Polyploidy and genome evolution[M]. Springer, Berlin.2012



[6] Feldman M, Levy A A. Genome evolution due to allopolyploidization in wheat[J]. Genetics, 2012, 192: 763–774.



[7] Crawford D J, Doyle J J, Soltis D E, et al. Contemporary and future studies in plant speciation, morphological/floral evolution and polyploidy: honouring the scientific contributions of Leslie D. Gottlieb to plant evolutionary biology.[J]. Philos Trans R Soc Lond B Biol Sci, 2014, 369(1648):20130341.



[8] Buggs R J, Wendel J F, Doyle J J, et al. The legacy of diploid progenitors in allopolyploid gene expression patterns[J]. Philos Trans R Soc Lond B Biol Sci, 2014, 369(1 648): 20130354.



[9] Brenchley R, Spannagl M, Pfeifer M, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing[J]. Nature, 2012, 491: 705–710.



[10] Paterson A H, Wendel J F, Gundlach H, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres[J]. Nature, 2012, 492: 423-427.



[11] Chalhoub B, Denoeud F, Liu S, et al. Early allopolyploid evolution in the post-neolithic Brassica napus oilseed genome[J]. Science, 2014, 345: 950–953.



[12] Li A, Liu DC, Wu J, et al. mRNA and small RNA transcriptomes reveal insights into dynamic homoeolog regulation of allopolyploid heterosis in nascent hexaploidy wheat[J]. Plant Cell, 2014, 26: 1 878-1 900.



[13] Zhang T, Hu Y, Jiang W, et al. Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement[J]. Nat Biotechnol, 2015, 33: 531–537.



[14] Griffiths S, Sharp R, Foote T N, et al. Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid wheat[J]. Nature, 2006, 439: 749–752.



[15] International Wheat Genome Sequencing Consortium (IWGSC). A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome[J]. Science, 2014, 345: 1251788.



[16] Wang X, Wang H, Wang J, et al. The genome of the mesopolyploid crop species Brassica rapa[J]. Nat Genet, 2011, 43: 1 035–1 039.



[17] Liu S, Liu Y, Yang X, et al. The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes[J]. Nat Commun, 2014, 5: 3 930.



[18] Yang J H, Liu D Y, Wang X W, et al. The genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene expression influencing selection[J]. Nat Genet, 2016, 48: 1 225-1 232.



[19] Pelé A, Trotoux G, Eber F, et al. The poor lonesome A subgenome of Brassica napus var. Darmor (AACC) may not survive without its mate[J]. New Phytol, 2016, 213(4): 1 886–1 897.



[20] Kerber E R. Wheat: reconstitution of the tetraploid component (AABB) of hexaploids[J]. Science, 1964, 143: 253–255.



[21] Zhang H K, Zhu B, Qi B, et al. Evolution of the BBAA component of bread wheat during its history at the allohexaploid level[J]. Plant Cell, 2014, 26: 2 761–2 776.



[22] Tu Y Q, Sun J, Ge X H, et al. Production and genetic analysis of partial hybrids from intertribal sexual crosses between Brassica napus and Isatis indigotica and progenies[J]. Genome, 2010, 53: 146–156.



[23] Zhu B, Tu Y Q, Zeng P, et al. Extraction of the constituent subgenomes of the natural allopolyploid rapeseed (Brassica napus L.) [J]. Genetics, 2016, 204: 1 015–1 027.



[24] Li Z Y, Ge X G. Unique chromosome behavior and genetic control in Brassica × Orychophragmus wide hybrids: a review[J]. Plant Cell Rep, 2007, 26:701-710.



[25] Ge X H, Ding L, Li Z Y. Nucleolar dominance and different genome behaviors in hybrids and allopolyploids[J]. Plant Cell Rep, 2013, 32: 1 661–1 673.



[26] Ge X H, Wang J, Li Z Y. Different genome-specific chromosome stabilities in synthetic Brassica allohexaploids revealed by wide crosses with Orychophragms[J]. Ann Bot, 2009, 104: 19-31.



[27] Zhou J N, Chen T, Cui C, et al. Distinct subgenome stabilities in synthesized Brassica allohexaploids[J]. Theor Appl Genet, 2016, 129: 1 257-1 271.



[28] Gupta M, Gupta S, Kumar H, et al. Population structure and breeding value of a new type of Brassica juncea created by combining A and B genomes from related allotetraploids[J]. Theor Appl Genet, 2015, 128: 221-234.



[29] 朱 斌,蔡梦鲜,翁庆北,等. 重组型白菜的细胞学及分子遗传解析[J].贵州师范大学学报,2017,35(5):30-35.



[30] Guo Y M, Chen S, Li Z Y, et al. Center of origin and centers of diversity in an ancient crop, Brassica rapa (turnip rape) [J]. J Heredity, 2014, 105: 555–565.



[31] Cui C, Ge X H, Gautam M, et al. Cytoplasmic and genomic effects on meiotic pairing in Brassica hybrids and allotetraploids from pair crosses of three cultivated diploids[J]. Genetics, 2012, 191: 725-738.



[32] Simmonds N W. Principles of crop improvement[M]. Longman Group, New York.1979.



[33] Gómez-Campo C, Prakash S. Origin and domestication[A]. In: C. Gómez-Campo (ed.), Biology of Brassica Coenospecies[M]. Elsevier Science, Amsterdam.1999. 59–106.



[34] Mizushima U, Tsunoda S. A plant exploration in Brassica and allied genera[J]. Tohoku J Agri Res, 1967, 17:249-277.



[35] Prakash S, Bhat S, Quiros C, et al. Brassica and its close allies: cytogenetics and evolution[J]. Plant Breed Rev, 2009, 31:21



[36] Soltis P S, Liu X, Marchant D B, et al. Polyploidy and novelty: Gottlieb’s legacy[J]. Phil Trans R Soc B, 2014, 369(1 648): 20130351.
PDF(1641 KB)

1357

Accesses

0

Citation

Detail

Sections
Recommended

/