Construction of core collection of polima CMS restorer lines in Brassica napus L. based on SLAF sequencing
Academy of Agricultural and Forestry Sciences, Qinghai University, Key Laboratory of Spring Rapeseed Genetic Im? provement/The Qinghai Research Branch of the National Rapeseed Genetic Improvement Center, Spring Rape Scientif? ic Observation Experimental Station of Ministry of Agriculture and Rural Areas, Qinghai Research and Development Center for Spring Rapeseed, Xining 810016, China
ZHAO Xu-tao,LIU Hai-dong,LI Kai-xiang,JIA Yong-peng,DU De zhi*. Construction of core collection of polima CMS restorer lines in Brassica napus L. based on SLAF sequencing[J]. 中国油料作物学报, 2019, 41(4): 497-.
[1] 刘晓兰. 甘蓝型油菜黄籽核心种质的建立和相关单核 苷酸多态性标记的筛选[D]. 重庆:西南大学,2012.
[2] 王建林,栾运芳,大次卓嘎,等. 中国栽培油菜的起源和进化[J]. 作物研究,2006,20(3):199-205.
[3] Nagaharu U. Genome analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilization[J]. JPN J Bot,1935: 389-452.
[4] 刘后利. 油菜遗传育种学[M]. 北京:中国农业大学出版社,2000.
[5] Gómez-Campo C,Prakash S. 2 Origin and domestication [J]. Dev Plant Genet Breed,1999,4:33-58.
[6] 傅廷栋. 杂交油菜的遗传与育种[M]. 武汉:湖北科学 技术出版社,2019.
[7] 傅廷栋,涂金星. 油菜杂种优势利用的现状与展望 [M]//刘后利. 作物育种学论. 北京:中国农业大学出版社,2002.
[8] 尹经章. 油菜杂种优势利用的现状与展望[J]. 新疆农业大学学报,2002,25(S1):40-46.
[9] Frankel O H. Genetic perspectives of germplasm conser vation[J]. Genetic Manipulation Impact on Man & Soci ety,1984.
[10] Brown A H D. Core collections:A practical approach to genetic resource management[J]. Genome,1989,31 (2):818-824.
[11] 邱丽娟,曹永生,常汝镇,等. 中国大豆(Glycine max) 核心种质构建Ⅰ.取样方法研究[J]. 中国农业科学, 2003,36(12):1442-1449.
[12] Zeuli P L,Qualset C O. Evaluation of five strategies for obtaining a core subset from a large genetic resource col?
lection of durum wheat[J]. Theor Appl Genet,1993,87 (3):295-304.
[13] 郭庆法,高新学. 玉米育种核心种质的构建与有效利用[J]. 中国农业科学,2000,33(C00):49-56.
[14] 魏兴华,汤圣祥,余汉勇,等. 浙江粳稻地方品种核心样品的构建方法[J]. 作物学报,2001,27(3): 324-328.
[15] 何余堂,涂金星,傅廷栋,等. 陕西省白菜型油菜核心种质的初步构建[J]. 中国油料作物学报,2002,24 (1):6-9.
[16] Thachuk C,Crossa J,Franco J,et al. Core Hunter:an algorithm for sampling genetic resources based on multi? ple genetic measures[J]. BMC Bioinformatics,2009, 10:243.
[17] 郭大龙,刘崇怀,张君玉,等. 葡萄核心种质的构建[J]. 中国农业科学,2012,45(6):1135-1143.
[18] Sun X W,Liu D Y,Zhang X F,et al. SLAF-seq:an ef? ficient method of large-scale de novo SNP discovery and genotyping using high-throughput sequencing[J]. PLoS One,2013,8(3):e58700.
[19] 唐立群,肖层林,王伟平. SNP分子标记的研究及其应用进展[J]. 中国农学通报,2012,28(12): 154-158.
[20] 王伟,刘凡,任莉,等. 采用SLAF-seq技术开发甘蓝型油菜霜霉病抗性SNP位点[J]. 中国油料作物学报, 2016,38(5):555-562.
[21] 苏文瑾,赵宁,雷剑,等. 基于SLAF-seq技术的甘薯SNP 位点开发[J]. 中国农业科学,2016,49(1): 27-47.
[22] Davey J W,Cezard T,Fuentes-Utrilla P,et al. Special features of RAD Sequencing data:implications for geno? typing[J]. Mol Ecol,2013,22(11):3151-3164. 9
[23] Kozich J J,Westcott S L,Baxter N T,et al. Develop? ment of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq illumina sequencing platform[J]. Appl Environ Microbiol,2013,79(17):5112-5120.
[24] Li H,Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform[J]. Bioinformatics, 2009,25(14):1754-1760.
[25] McKenna A,Hanna M,Banks E,et al. The Genome Analysis Toolkit:A MapReduce framework for analyzing next-generation DNA sequencing data[J]. Genome Res, 2010,20(9):1297-1303.
[26] Li H,Handsaker B,Wysoker A,et al. The sequence alignment/map format and SAMtools[J]. Bioinformatics, 2009,25(16):2078-2079.
[27] Tamura K,Peterson D,Peterson N,et al. MEGA5:mo? lecular evolutionary genetics analysis using maximum likelihood,evolutionary distance,and maximum parsi? mony methods[J]. Mol Biol Evol,2011,28(10):2731- 2739.
[28] Li R,Yu C,Li Y,et al. SOAP2:an improved ultrafast tool for short read alignment[J]. Bioinformatics,2009, 25(15):1966-1967.
[29] Wang Z Y,Li J,Luo Z X,et al. Characterization and development of EST-derived SSR markers in cultivated sweetpotato(Ipomoea batatas)[J]. BMC Plant Biology, 2011,11(1):1-9.
[30] 明军,张启翔,兰彦平. 梅花品种资源核心种质构建 [J]. 北京林业大学学报,2005,27(2):65-69.
[31] 王红霞. 核桃遗传多样性分析及核心种质的构建[D]. 保定:河北农业大学,2006.
[32] 刘娟,廖康,赵世荣,等. 利用ISSR分子标记构建新疆野杏核心种质资源[J]. 中国农业科学,2015,48 (10):2017-2028.
[33] 童巧珍,高昱,刘平安,等. 基于SRAP标记的湘产百合核心种质库构建[J]. 江苏农业科学,2016,44(1): 56-60.
[34] 高旭东,周旭梅. 我国玉米育种核心种质的研究现状与展望[J]. 黑龙江农业科学,2008(2):139-141.