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Identification of candidate gene controlling shade-tolerant by BSA-Seq in soybean
Wei-ming ZENG, Yan-zhu SU, Zhen-guang LAI, Shou-zhen YANG, Huai-zhu CHEN, Yu-rong TAN, Zu-dong SUN, Jun-yi GAI
CHINESE JOURNAL OF OIL CROP SCIENCES, 2021, 43(6): 1006-1015.   DOI: 10.19802/j.issn.1007-9084.2020358

样本

Sample

过滤后序列数

Clean reads

比对上数据

Mapping reads

比对率

Mapping rate/%

优质比对率

Properly paired ratio /%

平均测序深度

Mean depth

1×覆盖度Coverage≥1× /%

5×覆盖度

Coverage≥5× /%

10×覆盖度

Coverage≥10× /%

20×覆盖度

Coverage≥20× /%

齐佩华

Chippewa

438 671 653437 443 54999.7299.6766.4396.6696.1595.7094.57

矮脚早

Aijiaozao

472 681 742471 291 11399.7199.6671.5596.6796.1895.7794.81

不耐荫子代池

Shade-sensitive pool

220 976 673220 417 32499.7599.7033.4495.8494.7793.6486.78

耐荫子代池

Shade-tolerant pool

236 607 701234 782 37599.2399.1735.6496.0595.1294.1389.01
Table 2 Matching of quality control data with reference genome
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